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public interface Evaluator
Interface representing and alignment evaluator. An evaluator provides measures to determine the quality of an alignment. Typically this evaluation is computed using some sort of reference alignment.
This interface does not define methods to set a reference alignment, thus implenenting classes are free to become immutable wrt. the reference alignment by taking it as construction argument. This has the advantage that a single instance of an evaluator can be used to batch process the evaluation of several alignments.
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