de.fzi.kadmos.cmdutils
Class Evaluator

java.lang.Object
  de.fzi.kadmos.cmdutils.Evaluator

public final class Evaluator
extends Object

Command line evaluator utility. This tool can be used as a standalone application for evaluating an alignment.

 Usage: Evaluator REFERENCE ALIGNMENT [OPTION]...
   -c, --classical-pr   compute classical precision/recall (default)
   -s, --symmetric-pr   compute symmetric precision/recall
   -d, --deep-scan        if given, the directory containing one or more alignments is recursively scanned
   -x, --csv                      output evaluator result as CSV file
   -g, --gnu-plot                 output evaluator result as GNUPlot compatible file
   -b. --batch            batch processes a comma-separated csv-file containing pairs of reference alignment (format: ID,REFERENCE,ALIGNMENT)
   -l, --laxParsing     allows to parse alignments which have n:m correspondences and not only 1:1
   -h, --help           display help
   -v, --version        display version and license information
 

REFERENCE is a pathname or resolvable URL pointing to the reference alignment ALIGNMENT is a pathnames or resolvable URLs pointing to one of the following: a) Direct reference to an alignment to be evaluated b) Directory containing one or more alignments to be evaluated (if -d is provided, the directory is recursively scanned) c) Text file (with mime type plain/text) containing one or more direct references to alignments to be evaluated, directories, or other text files

Since:

1.0

Version:

1.3.0

Author:

Juergen Bock, Matthias Stumpp

Nested Class Summary

class

Evaluator.AlignmentWrapper

Method Summary

static void

main(String[] args) Entry point for the command line evaluator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

main

public static void main(String[] args)

Entry point for the command line evaluator.

Parameters:

args -