de.fzi.kadmos.cmdutils
Class EvaluatorTest

java.lang.Object
  de.fzi.kadmos.cmdutils.EvaluatorTest

public class EvaluatorTest
extends Object

Author:

Juergen Bock

Constructor Summary

EvaluatorTest()

Method Summary

static void	getAlignmentLocation() Loads an alignment that can be used for both reference alignment or alignment for evaluation.
void	testParseAlignmentBatch() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentCreateCSV() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentCreateGNU() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentDeepScanDirectory() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentLongOptCreateCSV() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentLongOptCreateGNU() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentNotResolvablePathname() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentNotResolvableURL() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentResolvableLocalURL() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentResolvablePathname() Test method for Evaluator.parseAlignment(String).
void	testParseAlignmentTxtFile() Test method for Evaluator.parseAlignment(String).
void	testParseArgumentsCandSOption() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsClassicalPRandSymmetricPROption() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsClassicalPROption() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsCOption() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsNoAlignmentNoOptions() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsNoArguments() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsNoOption() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsNoOptionsAbsolutePathnames() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsNoOptionsRelativePathnames() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsNoOptionsResolvableURLs() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsSOption() Test method for Evaluator.parseArguments(String[]).
void	testParseArgumentsSymmetricPROption() Test method for Evaluator.parseArguments(String[]).
void	testParseReferenceNotResolvablePathname() Test method for Evaluator.parseReference(String).
void	testParseReferenceNotResolvableURL() Test method for Evaluator.parseReference(String).
void	testParseReferenceResolvableLocalURL() Test method for Evaluator.parseReference(String).
void	testParseReferenceResolvablePathname() Test method for Evaluator.parseReference(String).
void	testParseTwoArgumentsNoOptionsAbsolutePathnames() Test method for Evaluator.parseArguments(String[]).
void	testParseTwoArgumentsNoOptionsResolvableURLs() Test method for Evaluator.parseArguments(String[]).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EvaluatorTest

public EvaluatorTest()

Method Detail

getAlignmentLocation

public static void getAlignmentLocation()

Loads an alignment that can be used for both reference alignment or alignment for evaluation.

testParseArgumentsNoArguments

public final void testParseArgumentsNoArguments()
                                         throws Exception

Test method for Evaluator.parseArguments(String[]). No argument given. Expected: KADMOSCMDException

Throws:

Exception

testParseArgumentsNoAlignmentNoOptions

public final void testParseArgumentsNoAlignmentNoOptions()
                                                  throws Exception

Test method for Evaluator.parseArguments(String[]). Reference given, but no alignment, no options. Expected: IllegalArgumentException

Throws:

Exception

testParseArgumentsNoOptionsResolvableURLs

public final void testParseArgumentsNoOptionsResolvableURLs()
                                                     throws Exception

Test method for Evaluator.parseArguments(String[]). No options, reference and alignment as resolvable URLs Expected: Reference and alignment locations correctly loaded.

Throws:

Exception

testParseTwoArgumentsNoOptionsResolvableURLs

public final void testParseTwoArgumentsNoOptionsResolvableURLs()
                                                        throws Exception

Test method for Evaluator.parseArguments(String[]). No options, reference and alignment as resolvable URLs Expected: Reference and alignment locations correctly loaded.

Throws:

Exception

testParseArgumentsNoOptionsAbsolutePathnames

public final void testParseArgumentsNoOptionsAbsolutePathnames()
                                                        throws Exception

Test method for Evaluator.parseArguments(String[]). No options, reference and alignment as absolute pathnames Expected: Reference and alignment locations correctly loaded.

Throws:

Exception

testParseTwoArgumentsNoOptionsAbsolutePathnames

public final void testParseTwoArgumentsNoOptionsAbsolutePathnames()
                                                           throws Exception

Test method for Evaluator.parseArguments(String[]). No options, reference and alignment as absolute pathnames Expected: Reference and alignment locations correctly loaded.

Throws:

Exception

testParseArgumentsNoOptionsRelativePathnames

public final void testParseArgumentsNoOptionsRelativePathnames()
                                                        throws Exception

Test method for Evaluator.parseArguments(String[]). No options, reference and alignment as relative pathnames Expected: Reference and alignment locations correctly loaded.

Throws:

Exception

testParseArgumentsNoOption

public final void testParseArgumentsNoOption()
                                      throws Exception

Test method for Evaluator.parseArguments(String[]). No option, reference and alignment as resolvable URLs Expected: computing classical precision and recall is enabled.

Throws:

Exception

testParseArgumentsCOption

public final void testParseArgumentsCOption()
                                     throws Exception

Test method for Evaluator.parseArguments(String[]). -c option, reference and alignment as resolvable URLs Expected: computing classical precision and recall is enabled.

Throws:

Exception

testParseArgumentsSOption

public final void testParseArgumentsSOption()
                                     throws Exception

Test method for Evaluator.parseArguments(String[]). -s option, reference and alignment as resolvable URLs Expected: computing classical precision and recall is disabled, computing symmetric precision and recall is enabled.

Throws:

Exception

testParseArgumentsCandSOption

public final void testParseArgumentsCandSOption()
                                         throws Exception

Test method for Evaluator.parseArguments(String[]). -c and -s options, reference and alignment as resolvable URLs Expected: computing classical precision and recall is disabled, computing symmetric precision and recall is enabled.

Throws:

Exception

testParseArgumentsClassicalPROption

public final void testParseArgumentsClassicalPROption()
                                               throws Exception

Test method for Evaluator.parseArguments(String[]). --classical-pr option, reference and alignment as resolvable URLs Expected: computing classical precision and recall is enabled.

Throws:

Exception

testParseArgumentsSymmetricPROption

public final void testParseArgumentsSymmetricPROption()
                                               throws Exception

Test method for Evaluator.parseArguments(String[]). --symmetric-pr option, reference and alignment as resolvable URLs Expected: computing classical precision and recall is disabled, computing symmetric precision and recall is enabled.

Throws:

Exception

testParseArgumentsClassicalPRandSymmetricPROption

public final void testParseArgumentsClassicalPRandSymmetricPROption()
                                                             throws Exception

Test method for Evaluator.parseArguments(String[]). --classical-pr and --symmetric-pr option, reference and alignment as resolvable URLs Expected: computing classical precision and recall is disabled, computing symmetric precision and recall is enabled.

Throws:

Exception

testParseReferenceResolvableLocalURL

public final void testParseReferenceResolvableLocalURL()
                                                throws Exception

Test method for Evaluator.parseReference(String). Resolvable local URL given. Expected: success

Throws:

Exception

testParseReferenceNotResolvableURL

public final void testParseReferenceNotResolvableURL()
                                              throws Exception

Test method for Evaluator.parseReference(String). Not resolvable URL given. Expected: success

Throws:

Exception

testParseReferenceResolvablePathname

public final void testParseReferenceResolvablePathname()
                                                throws Exception

Test method for Evaluator.parseReference(String). Resolvable pathname given. Expected: success

Throws:

Exception

testParseReferenceNotResolvablePathname

public final void testParseReferenceNotResolvablePathname()
                                                   throws Exception

Test method for Evaluator.parseReference(String). Not resolvable pathname given. Expected: success

Throws:

Exception

testParseAlignmentResolvableLocalURL

public final void testParseAlignmentResolvableLocalURL()
                                                throws Exception

Test method for Evaluator.parseAlignment(String). Resolvable local URL given. Expected: success

Throws:

Exception

testParseAlignmentNotResolvableURL

public final void testParseAlignmentNotResolvableURL()
                                              throws Exception

Test method for Evaluator.parseAlignment(String). Not resolvable URL given. Expected: success

Throws:

Exception

testParseAlignmentResolvablePathname

public final void testParseAlignmentResolvablePathname()
                                                throws Exception

Test method for Evaluator.parseAlignment(String). Resolvable pathname given. Expected: success

Throws:

Exception

testParseAlignmentNotResolvablePathname

public final void testParseAlignmentNotResolvablePathname()
                                                   throws Exception

Test method for Evaluator.parseAlignment(String). Not resolvable pathname given. Expected: success

Throws:

Exception

testParseAlignmentTxtFile

public final void testParseAlignmentTxtFile()
                                     throws Exception

Test method for Evaluator.parseAlignment(String). Tests parsing of alignment text file Expected: success

Throws:

Exception

testParseAlignmentDeepScanDirectory

public final void testParseAlignmentDeepScanDirectory()
                                               throws Exception

Test method for Evaluator.parseAlignment(String). Tests deep scan of directory Expected: successs

Throws:

Exception

testParseAlignmentBatch

public final void testParseAlignmentBatch()
                                   throws Exception

Test method for Evaluator.parseAlignment(String). Tests deep scan of directory Expected: successs

Throws:

Exception

testParseAlignmentCreateCSV

public final void testParseAlignmentCreateCSV()
                                       throws Exception

Test method for Evaluator.parseAlignment(String). Tests deep scan of directory Expected: successs

Throws:

Exception

testParseAlignmentLongOptCreateCSV

public final void testParseAlignmentLongOptCreateCSV()
                                              throws Exception

Test method for Evaluator.parseAlignment(String). Tests deep scan of directory Expected: successs

Throws:

Exception

testParseAlignmentCreateGNU

public final void testParseAlignmentCreateGNU()
                                       throws Exception

Test method for Evaluator.parseAlignment(String). Tests deep scan of directory Expected: successs

Throws:

Exception

testParseAlignmentLongOptCreateGNU

public final void testParseAlignmentLongOptCreateGNU()
                                              throws Exception

Test method for Evaluator.parseAlignment(String). Tests deep scan of directory Expected: successs

Throws:

Exception